Mycobacterial carbonic anhydrase inhibition with phenolic acids and esters: kinetic and computational investigations

Org Biomol Chem. 2016 Sep 21;14(35):8322-30. doi: 10.1039/c6ob01477a. Epub 2016 Aug 17.

Abstract

A series of phenolic acids and some of their esters, derivatives of caffeic, ferulic, and p-coumaric acid, was investigated for the inhibition of three β-carbonic anhydrases (CAs, EC 4.2.1.1) from the pathogenic bacterium Mycobacterium tuberculosis, Rv1248, Rv3588 and Rv3273 β-CAs. Some of these compounds were low micromolar inhibitors of the pathogenic enzymes and they did not show inhibitory activity against the human widespread cytosolic isoforms CA I and II. The binding mode of these inhibitors to two of the bacterial enzymes was investigated by computational approaches. We propose that the inhibitors anchor to the zinc-coordinated water molecule from the CA active site interfering with the nucleophilic attack of the zinc hydroxide on the substrate CO2. These compounds may be considered as interesting anti-mycobacterial lead compounds.

MeSH terms

  • Amino Acid Sequence
  • Bacterial Proteins / chemistry*
  • Caffeic Acids / chemistry
  • Carbonic Anhydrase Inhibitors / chemistry*
  • Carbonic Anhydrases / chemistry*
  • Catalytic Domain
  • Coumaric Acids / chemistry
  • Esters / chemistry
  • Humans
  • Kinetics
  • Models, Molecular*
  • Mycobacterium tuberculosis / enzymology*
  • Propionates / chemistry
  • Protein Binding
  • Protein Conformation
  • Structure-Activity Relationship
  • Zinc / chemistry

Substances

  • Bacterial Proteins
  • Caffeic Acids
  • Carbonic Anhydrase Inhibitors
  • Coumaric Acids
  • Esters
  • Propionates
  • ferulic acid
  • Carbonic Anhydrases
  • p-coumaric acid
  • Zinc
  • caffeic acid