Identification and comparative analyses of Siamois cluster genes in Xenopus laevis and tropicalis

Dev Biol. 2017 Jun 15;426(2):374-383. doi: 10.1016/j.ydbio.2016.07.015. Epub 2016 Aug 10.

Abstract

Two siamois-related homeobox genes siamois (sia1) and twin (sia2), have been reported in Xenopus laevis. These genes are expressed in the blastula chordin- and noggin-expressing (BCNE) center and the Nieuwkoop center, and have complete secondary axis-inducing activity when over-expressed on the ventral side of the embryo. Using whole genome sequences of X. tropicalis and X. laevis, we identified two additional siamois-related genes, which are tandemly duplicated near sia1 and sia2 to form the siamois gene cluster. Four siamois genes in X. tropicalis are transcribed at blastula to gastrula stages. In X. laevis, the siamois gene cluster is present on both homeologous chromosomes, XLA3L and XLA3S. Transcripts from seven siamois genes (three on XLA3L and four on XLA3S) in X. laevis were detected at blastula to gastrula stages. A transcribed gene, sia1p. S, encodes an inactive protein without a homeodomain. When over-expressed ventrally, all siamois-related genes tested in this study except for sia1p. S induced a complete secondary axis, indicating that X. tropicalis and X. laevis have four and six active siamois-related genes, respectively. Of note, each gene required different amounts of mRNA for full activity. These results suggest the possibility that siamois cluster genes have functional redundancy to endow robustness and quickness to organizer formation in Xenopus species.

Keywords: Early development; Genome; Secondary axis; Siamois-related gene; Wnt/β--catenin; Xenopus.

Publication types

  • Comparative Study

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Blastula / metabolism
  • Body Patterning / genetics
  • Chromosome Mapping
  • Conserved Sequence
  • Diploidy
  • Embryo, Nonmammalian / metabolism
  • Gastrula / metabolism
  • Gene Dosage
  • Gene Expression Regulation, Developmental
  • Homeodomain Proteins / genetics*
  • Multigene Family*
  • Organizers, Embryonic
  • Sequence Alignment
  • Sequence Homology, Amino Acid
  • Species Specificity
  • Tetraploidy
  • Wnt Signaling Pathway
  • Xenopus / embryology
  • Xenopus / genetics*
  • Xenopus Proteins / genetics*
  • Xenopus laevis / embryology
  • Xenopus laevis / genetics

Substances

  • Homeodomain Proteins
  • SIA1 protein, Xenopus
  • Xenopus Proteins