Tailor-Made Protein Tyrosine Phosphatases: In Vitro Site-Directed Mutagenesis of PTEN and PTPRZ-B

Methods Mol Biol. 2016:1447:79-93. doi: 10.1007/978-1-4939-3746-2_5.

Abstract

In vitro site-directed mutagenesis (SDM) of protein tyrosine phosphatases (PTPs) is a commonly used approach to experimentally analyze PTP functions at the molecular and cellular level and to establish functional correlations with PTP alterations found in human disease. Here, using the tumor-suppressor PTEN and the receptor-type PTPRZ-B (short isoform from PTPRZ1 gene) phosphatases as examples, we provide a brief insight into the utility of specific mutations in the experimental analysis of PTP functions. We describe a standardized, rapid, and simple method of mutagenesis to perform single and multiple amino acid substitutions, as well as deletions of short nucleotide sequences, based on one-step inverse PCR and DpnI restriction enzyme treatment. This method of SDM is generally applicable to any other protein of interest.

Keywords: PCR; PTEN; PTPRZ-B; PTPRZ1; Protein tyrosine phosphatase; Site-directed mutagenesis.

MeSH terms

  • DNA, Complementary / genetics
  • Escherichia coli / genetics
  • Humans
  • Mutagenesis, Site-Directed / methods*
  • Mutation
  • PTEN Phosphohydrolase / genetics*
  • Plasmids / genetics
  • Receptor-Like Protein Tyrosine Phosphatases, Class 5 / genetics*

Substances

  • DNA, Complementary
  • PTPRZ1 protein, human
  • Receptor-Like Protein Tyrosine Phosphatases, Class 5
  • PTEN Phosphohydrolase
  • PTEN protein, human