Interdomain Conformational Changes Provide Allosteric Regulation en Route to Chorismate

J Biol Chem. 2016 Oct 14;291(42):21836-21847. doi: 10.1074/jbc.M116.741637. Epub 2016 Aug 8.

Abstract

Multifunctional proteins play a variety of roles in metabolism. Here, we examine the catalytic function of the combined 3-deoxy-d-arabino heptulosonate-7-phosphate synthase (DAH7PS) and chorismate mutase (CM) from Geobacillus sp. DAH7PS operates at the start of the biosynthetic pathway for aromatic metabolites, whereas CM operates in a dedicated branch of the pathway for the biosynthesis of amino acids tyrosine and phenylalanine. In line with sequence predictions, the two catalytic functions are located in distinct domains, and these two activities can be separated and retain functionality. For the full-length protein, prephenate, the product of the CM reaction, acts as an allosteric inhibitor for the DAH7PS. The crystal structure of the full-length protein with prephenate bound and the accompanying small angle x-ray scattering data reveal the molecular mechanism of the allostery. Prephenate binding results in the tighter association between the dimeric CM domains and the tetrameric DAH7PS, occluding the active site and therefore disrupting DAH7PS function. Acquisition of a physical gating mechanism to control catalytic function through gene fusion appears to be a general mechanism for providing allostery for this enzyme.

Keywords: Bacillus; DAHPS; X-ray scattering; allosteric regulation; aromatic amino acid; chorismate mutase; crystal structure; inhibition mechanism; multifunctional enzyme; shikimate.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 3-Deoxy-7-Phosphoheptulonate Synthase / genetics
  • 3-Deoxy-7-Phosphoheptulonate Synthase / metabolism*
  • Allosteric Regulation
  • Amino Acids, Aromatic / metabolism
  • Chorismate Mutase / genetics
  • Chorismate Mutase / metabolism*
  • Crystallography, X-Ray
  • Geobacillus / enzymology
  • Shikimic Acid / metabolism

Substances

  • Amino Acids, Aromatic
  • Shikimic Acid
  • 3-Deoxy-7-Phosphoheptulonate Synthase
  • Chorismate Mutase

Associated data

  • PDB/1ECM
  • PDB/3NVT
  • PDB/3TFC
  • PDB/5J6F