Structure of the human DNA-repair protein RAD52 containing surface mutations

Acta Crystallogr F Struct Biol Commun. 2016 Aug;72(Pt 8):598-603. doi: 10.1107/S2053230X1601027X. Epub 2016 Jul 13.

Abstract

The Rad52 protein is a eukaryotic single-strand DNA-annealing protein that is involved in the homologous recombinational repair of DNA double-strand breaks. The isolated N-terminal half of the human RAD52 protein (RAD52(1-212)) forms an undecameric ring structure with a surface that is mostly positively charged. In the present study, it was found that RAD52(1-212) containing alanine mutations of the charged surface residues (Lys102, Lys133 and Glu202) is highly amenable to crystallization. The structure of the mutant RAD52(1-212) was solved at 2.4 Å resolution. The structure revealed an association between the symmetry-related RAD52(1-212) rings, in which a partially unfolded, C-terminal region of RAD52 extended into the DNA-binding groove of the neighbouring ring in the crystal. The alanine mutations probably reduced the surface entropy of the RAD52(1-212) ring and stabilized the ring-ring association observed in the crystal.

Keywords: RAD52; higher order interaction; homologous recombinational repair; single-strand annealing proteins; ssDNA-binding protein; surface-entropy reduction.

MeSH terms

  • Alanine / chemistry*
  • Alanine / metabolism
  • Amino Acid Sequence
  • Amino Acid Substitution
  • Binding Sites
  • Cloning, Molecular
  • Crystallography, X-Ray
  • DNA / chemistry*
  • DNA / metabolism
  • DNA Repair
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Gene Expression
  • Glutamic Acid / chemistry*
  • Glutamic Acid / metabolism
  • Humans
  • Lysine / chemistry*
  • Lysine / metabolism
  • Models, Molecular
  • Mutation*
  • Plasmids / chemistry
  • Plasmids / metabolism
  • Protein Binding
  • Protein Folding
  • Protein Interaction Domains and Motifs
  • Protein Structure, Secondary
  • Rad52 DNA Repair and Recombination Protein / chemistry*
  • Rad52 DNA Repair and Recombination Protein / genetics
  • Rad52 DNA Repair and Recombination Protein / metabolism
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Sequence Alignment
  • Sequence Homology, Amino Acid
  • Static Electricity

Substances

  • RAD52 protein, human
  • Rad52 DNA Repair and Recombination Protein
  • Recombinant Proteins
  • Glutamic Acid
  • DNA
  • Lysine
  • Alanine