Draft genome sequence of Mycobacterium rufum JS14(T), a polycyclic-aromatic-hydrocarbon-degrading bacterium from petroleum-contaminated soil in Hawaii

Yunyoung Kwak; Qing X Li; Jae-Ho Shin

doi:10.1186/s40793-016-0167-5

Draft genome sequence of Mycobacterium rufum JS14(T), a polycyclic-aromatic-hydrocarbon-degrading bacterium from petroleum-contaminated soil in Hawaii

Stand Genomic Sci. 2016 Aug 2:11:47. doi: 10.1186/s40793-016-0167-5. eCollection 2016.

Authors

Yunyoung Kwak¹, Qing X Li², Jae-Ho Shin¹

Affiliations

¹ School of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University, Daegu, 702-701 Republic of Korea.
² Department of Molecular Biosciences and Bioengineering, University of Hawaii, Honolulu, HI 96822 USA.

Abstract

Mycobacterium rufum JS14(T) (=ATCC BAA-1377(T), CIP 109273(T), JCM 16372(T), DSM 45406(T)), a type strain of the species Mycobacterium rufum sp. . belonging to the family Mycobacteriaceae, was isolated from polycyclic aromatic hydrocarbon (PAH)-contaminated soil in Hilo (HI, USA) because it harbors the capability of degrading PAH. Here, we describe the first genome sequence of strain JS14(T), with brief phenotypic characteristics. The genome is composed of 6,176,413 bp with 69.25 % G + C content and contains 5810 protein-coding genes with 54 RNA genes. The genome information on M. rufum JS14(T) will provide a better understanding of the complexity of bacterial catabolic pathways for degradation of specific chemicals.

Keywords: Biodegradation; Mycobacterium; Polycyclic aromatic hydrocarbon.

Publication types

Case Reports