Circadian RNA expression elicited by 3'-UTR IRAlu-paraspeckle associated elements

Elife. 2016 Jul 21:5:e14837. doi: 10.7554/eLife.14837.

Abstract

Paraspeckles are nuclear bodies form around the long non-coding RNA, Neat1, and RNA-binding proteins. While their role is not fully understood, they are believed to control gene expression at a post-transcriptional level by means of the nuclear retention of mRNA containing in their 3'-UTR inverted repeats of Alu sequences (IRAlu). In this study, we found that, in pituitary cells, all components of paraspeckles including four major proteins and Neat1 displayed a circadian expression pattern. Furthermore the insertion of IRAlu at the 3'-UTR of the EGFP cDNA led to a rhythmic circadian nuclear retention of the egfp mRNA that was lost when paraspeckles were disrupted whereas insertion of a single antisense Alu had only a weak effect. Using real-time video-microscopy, these IRAlu were further shown to drive a circadian expression of EGFP protein. This study shows that paraspeckles, thanks to their circadian expression, control circadian gene expression at a post-transcriptional level.

Keywords: cell biology; chromosomes; circadian oscillators; circadian rhythm; genes; nuclear RNA retention; paraspeckle; pituitary cells.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 3' Untranslated Regions*
  • Animals
  • Cell Line
  • Circadian Rhythm*
  • Gene Expression Regulation*
  • Genes, Reporter
  • Green Fluorescent Proteins / analysis
  • Green Fluorescent Proteins / genetics
  • Intravital Microscopy
  • Inverted Repeat Sequences*
  • Microscopy, Video
  • Nuclear Proteins / biosynthesis*
  • Nuclear Proteins / genetics
  • RNA, Long Noncoding / biosynthesis*
  • RNA, Long Noncoding / genetics
  • RNA-Binding Proteins / biosynthesis*
  • RNA-Binding Proteins / genetics
  • Rats

Substances

  • 3' Untranslated Regions
  • NEAT1 long non-coding RNA, human
  • Nuclear Proteins
  • RNA, Long Noncoding
  • RNA-Binding Proteins
  • enhanced green fluorescent protein
  • Green Fluorescent Proteins

Grants and funding

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.