[Calculation of mobility and entropy of the binding of molecules by crystals]

Mol Biol (Mosk). 2016 May-Jun;50(3):520-9. doi: 10.7868/S0026898416020063.
[Article in Russian]

Abstract

A simple method for evaluating a range of molecular movements in crystals has been developed. This estimate is needed to calculate the entropy of binding, in particular in protein-ligand complexes. The estimate is based on experimental data concerning the enthalpy of sublimation and saturated vapor pressure obtained for 15 organic crystals with melting temperatures of 25-80°С. For this set, we calculated the values of the average range and the corresponding average amplitude of molecular movements in crystals that constituted 0.75 ± 0.14 Å and 0.18 ± 0.03 Å, respectively. The entropy of sublimation calculated based on the average range of molecular movements in crystals was well consistent with the experimental data.

Keywords: amplitude of movements; biochemistry; computational chemistry; molecular crystals; range of molecular movements in crystals; sublimation enthalpy; sublimation entropy.

MeSH terms

  • Biphenyl Compounds / chemistry*
  • Caprolactam / chemistry*
  • Entropy
  • Isoquinolines / chemistry*
  • Nitrophenols / chemistry*
  • Temperature
  • Xylenes / chemistry*

Substances

  • Biphenyl Compounds
  • Isoquinolines
  • Nitrophenols
  • Xylenes
  • diphenyl
  • Caprolactam
  • isoquinoline
  • 3,5-xylenol