Hydrocarbon biodegradation by Arctic sea-ice and sub-ice microbial communities during microcosm experiments, Northwest Passage (Nunavut, Canada)

FEMS Microbiol Ecol. 2016 Oct;92(10):fiw130. doi: 10.1093/femsec/fiw130. Epub 2016 Jul 6.

Abstract

The increasing accessibility to navigation and offshore oil exploration brings risks of hydrocarbon releases in Arctic waters. Bioremediation of hydrocarbons is a promising mitigation strategy but challenges remain, particularly due to low microbial metabolic rates in cold, ice-covered seas. Hydrocarbon degradation potential of ice-associated microbes collected from the Northwest Passage was investigated. Microcosm incubations were run for 15 days at -1.7°C with and without oil to determine the effects of hydrocarbon exposure on microbial abundance, diversity and activity, and to estimate component-specific hydrocarbon loss. Diversity was assessed with automated ribosomal intergenic spacer analysis and Ion Torrent 16S rRNA gene sequencing. Bacterial activity was measured by (3)H-leucine uptake rates. After incubation, sub-ice and sea-ice communities degraded 94% and 48% of the initial hydrocarbons, respectively. Hydrocarbon exposure changed the composition of sea-ice and sub-ice communities; in sea-ice microcosms, Bacteroidetes (mainly Polaribacter) dominated whereas in sub-ice microcosms, the contribution of Epsilonproteobacteria increased, and that of Alphaproteobacteria and Bacteroidetes decreased. Sequencing data revealed a decline in diversity and increases in Colwellia and Moritella in oil-treated microcosms. Low concentration of dissolved organic matter (DOM) in sub-ice seawater may explain higher hydrocarbon degradation when compared to sea ice, where DOM was abundant and composed of labile exopolysaccharides.

Keywords: 16S ribosomal RNA gene sequencing; Arctic; bioremediation; hydrocarbon biodegradation; microbial community fingerprinting; sea ice.

MeSH terms

  • Alphaproteobacteria / genetics
  • Arctic Regions
  • Bacteroidetes / genetics
  • Biodegradation, Environmental*
  • Canada
  • Flavobacteriaceae / genetics
  • Hydrocarbons / metabolism*
  • Ice Cover / microbiology*
  • Nunavut
  • Petroleum / metabolism
  • Petroleum Pollution*
  • RNA, Ribosomal, 16S / genetics
  • Seawater / microbiology
  • Water Pollutants, Chemical / metabolism*

Substances

  • Hydrocarbons
  • Petroleum
  • RNA, Ribosomal, 16S
  • Water Pollutants, Chemical