A novel binuclear copper complex incorporating a nalidixic acid derivative displaying a one-dimensional coordination polymeric structure

F R G Bergamini; M A Ribeiro; P C M L Miranda; A L B Formiga; P P Corbi

doi:10.1107/S2053229616008913

A novel binuclear copper complex incorporating a nalidixic acid derivative displaying a one-dimensional coordination polymeric structure

Acta Crystallogr C Struct Chem. 2016 Jul 1;72(Pt 7):544-8. doi: 10.1107/S2053229616008913. Epub 2016 Jun 14.

Authors

F R G Bergamini¹, M A Ribeiro¹, P C M L Miranda², A L B Formiga¹, P P Corbi¹

Affiliations

¹ Department of Inorganic Chemistry, Institute of Chemistry, University of Campinas-UNICAMP, PO Box 6154, Campinas, SP 13083-970, Brazil.
² Department of Organic Chemistry, University of Campinas, PO Box 6154, Campinas, SP 13083-970, Brazil.

PMID: 27377275
DOI: 10.1107/S2053229616008913

Abstract

The identification of the antibacterial action of nalidixic acid (nx) was central to the development of the quinolone antibacterial compounds. The ability of the nx naphthyridyl ring to interact with and inhibit some proteins has encouraged the investigation of similar structures in the search for more active compounds with less adverse effects. The possibility of structural modification by attachment of other biologically active moieties to the naphthyridyl ring of nx allowed the development of new active antimicrobial molecules. Hydrazone derivatives of nx can be synthesized easily based on the condensation of the hydrazide derivative of nx with the desired aldehyde or ketone. Only a few complexes with nx hydrazone derivatives have been described but for none were the crystal structures elucidated. The synthesis of a new one-dimensional Cu(II) coordination polymer, namely catena-poly[[copper(II)-di-μ-chlorido-copper(II)-{μ-1-ethyl-N'-[(1H-imidazol-4-yl)methylidene]-7-methyl-4-oxo-1,4-dihydro-1,8-naphthyridine-3-carbohydrazidato}-[dimethanolcopper(II)]-{μ-1-ethyl-N'-[(1H-imidazol-3-yl)methylidene]-7-methyl-4-oxo-1,4-dihydro-1,8-naphthyridine-3-carbohydrazidato}] dichloride methanol tetrasolvate], {[Cu3(C16H15N6O2)2Cl2(CH3OH)2]Cl2·4CH3OH}n, with the (1H-imidazol-4-yl)methylidene carbohydrazide derivative of nalidixic acid (denoted h4imi), is presented and its structure is compared to the density functional theory (DFT) optimized structure of free h4imi. The title structure presents an octahedral Cu(II) ion on an inversion centre alternating along a polymer chain with a square-pyramidal Cu(II) ion, with the two Cu(II) centres bridged by two chloride ligands. Hydrogen bonds involving chloride counter-ions and methanol solvent molecules mediate the three-dimensional packing of the polymer. Comparison of the geometrical results from the structure analysis with those derived from a DFT study of the free ligand reveal the differences that arise upon coordination.

Keywords: DFT; binuclear complex; carbonyl hydrazone; computational chemistry; crystal structure; nalidixic acid; one-dimensional copper(II) coordination polymer.