Identification of differentially expressed genes in the spleens of polyriboinosinic polyribocytidylic acid (poly I:C)-stimulated yellow catfish Pelteobagrus fulvidraco

Fish Shellfish Immunol. 2016 Sep:56:278-285. doi: 10.1016/j.fsi.2016.06.041. Epub 2016 Jun 29.

Abstract

The yellow catfish, Pelteobagrus fulvidraco (Siluriformes: Bagridae) is an economically important fish in China. However, genomic research and resources on this species are largely unavailable and still in infancy. In the present study, we constructed a cDNA library following poly I:C injection to screen for immune response genes in the spleens of P. fulvidraco using suppression subtractive hybridization (SSH). A total of 420 putative expressed sequence tag (EST) clones were identified at 24 h post-injection, which contain 103 genes consisting of 25 immune response genes, 12 cytoskeleton genes, 7 cell cycle and apoptosis genes, 7 respiration and energy metabolism genes, 7 transport genes, 26 metabolism genes, 10 stress response genes, 9 translational regulation genes, and 71 unknown genes. Real-time quantitative reverse transcription-PCR (qRT-PCR) results revealed that a set of randomly selected immune response genes were identified to be up-regulated after 24 h of poly I:C stimulation compared to controls. Our study provides an annotation of immune genes in detail and insight into fish immunity.

Keywords: Fish immunity; Pelteobagrus fulvidraco; Poly I:C; Suppression subtractive hybridization.

MeSH terms

  • Animals
  • Catfishes / genetics*
  • Catfishes / immunology
  • Catfishes / metabolism
  • Fish Proteins / genetics*
  • Fish Proteins / metabolism
  • Gene Library
  • Immunity, Innate*
  • Poly I-C / pharmacology*
  • Real-Time Polymerase Chain Reaction / veterinary
  • Sequence Analysis, DNA / veterinary
  • Spleen / immunology
  • Spleen / metabolism
  • Subtractive Hybridization Techniques / veterinary
  • Up-Regulation

Substances

  • Fish Proteins
  • Poly I-C