Lambda gpP-DnaB Helicase Sequestration and gpP-RpoB Associated Effects: On Screens for Auxotrophs, Selection for Rif(R), Toxicity, Mutagenicity, Plasmid Curing

Viruses. 2016 Jun 22;8(6):172. doi: 10.3390/v8060172.

Abstract

The bacteriophage lambda replication initiation protein P exhibits a toxic effect on its Escherichia coli (E. coli) host, likely due to the formation of a dead-end P-DnaB complex, sequestering the replicative DnaB helicase from further activity. Intracellular expression of P triggers SOS-independent cellular filamentation and rapidly cures resident ColE1 plasmids. The toxicity of P is suppressed by alleles of P or dnaB. We asked whether P buildup within a cell can influence E. coli replication fidelity. The influence of P expression from a defective prophage, or when cloned and expressed from a plasmid was examined by screening for auxotrophic mutants, or by selection for rifampicin resistant (Rif(R)) cells acquiring mutations within the rpoB gene encoding the β-subunit of RNA polymerase (RNAP), nine of which proved unique. Using fluctuation assays, we show that the intracellular expression of P evokes a mutator effect. Most of the Rif(R) mutants remained P(S) and localized to the Rif binding pocket in RNAP, but a subset acquired a P(R) phenotype, lost sensitivity to ColE1 plasmid curing, and localized outside of the pocket. One P(R) mutation was identical to rpo*Q148P, which alleviates the UV-sensitivity of ruv strains defective in the migration and resolution of Holliday junctions and destabilizes stalled RNAP elongation complexes. The results suggest that P-DnaB sequestration is mutagenic and supports an earlier observation that P can interact with RNAP.

Keywords: ColE1 plasmid curing; E. coli DnaB replicative helicase; P-DnaB sequestration; Replicative Killing phenotype; bacteriophage lambda (λ) replication initiation protein P; cellular mutagenesis; rpoB encoding β-subunit of RNA polymerase (RNAP); rpoB mutations suppressing P-lethality; screening for auxotrophs; selecting for RifR mutants.

MeSH terms

  • Anti-Bacterial Agents / pharmacology
  • Bacteriophage lambda / growth & development*
  • DNA-Directed RNA Polymerases / genetics
  • DNA-Directed RNA Polymerases / metabolism*
  • DnaB Helicases / metabolism*
  • Drug Resistance, Bacterial
  • Escherichia coli / virology*
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism*
  • Host-Parasite Interactions*
  • Mutation*
  • Protein Binding
  • Rifampin / pharmacology
  • Viral Proteins / toxicity*

Substances

  • Anti-Bacterial Agents
  • DNA replication complex protein, Bacteriophage lambda
  • Escherichia coli Proteins
  • Viral Proteins
  • rpoB protein, E coli
  • DNA-Directed RNA Polymerases
  • dnaB protein, E coli
  • DnaB Helicases
  • Rifampin