Actin depolymerization-induced changes in proteome of Arabidopsis roots

J Proteomics. 2017 Feb 5:153:89-99. doi: 10.1016/j.jprot.2016.06.010. Epub 2016 Jun 14.

Abstract

Actin cytoskeleton is a vital cellular structure primarily known for controlling cell integrity, division and expansion. Here we present a proteomic dissection of Arabidopsis roots treated by actin depolymerizing agent latrunculin B. Pharmacological disintegration of the actin cytoskeleton by latrunculin B caused downregulation of several proteins involved in the actin organization and dynamics. Moreover, this approach helped to identify new protein candidates involved in gene transcription, due to the altered abundance of proteins involved in mRNA nuclear export. Finally, latrunculin B negatively affected the abundance of abscisic acid (ABA) responsive proteins.

Significance: This article substantially contributes to the current knowledge about the importance of actin organization and dynamics in proteome remodelling. We employed gel based and gel free proteomic analyses and identified several new protein candidates and protein networks linking actin dynamics to the gene transcription and to the ABA response in Arabidopsis.

Keywords: ABA responsive proteins; Actin cytoskeleton; Arabidopsis root; Latrunculin B; Proteomics; mRNA export.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Abscisic Acid / physiology
  • Actin Cytoskeleton / drug effects
  • Actins / chemistry*
  • Actins / metabolism
  • Arabidopsis / chemistry*
  • Arabidopsis Proteins / analysis
  • Arabidopsis Proteins / chemistry
  • Arabidopsis Proteins / metabolism
  • Bridged Bicyclo Compounds, Heterocyclic / pharmacology
  • Plant Roots / chemistry*
  • Polymerization / drug effects
  • Proteome / analysis
  • Proteome / drug effects*
  • Proteomics / methods
  • Thiazolidines / pharmacology

Substances

  • Actins
  • Arabidopsis Proteins
  • Bridged Bicyclo Compounds, Heterocyclic
  • Proteome
  • Thiazolidines
  • Abscisic Acid
  • latrunculin B