Non-chemical proton-dependent steps prior to O2-activation limit Azotobacter vinelandii 3-mercaptopropionic acid dioxygenase (MDO) catalysis

Arch Biochem Biophys. 2016 Aug 15:604:86-94. doi: 10.1016/j.abb.2016.06.009. Epub 2016 Jun 13.

Abstract

3-mercaptopropionate dioxygenase from Azotobacter vinelandii (Av MDO) is a non-heme mononuclear iron enzyme that catalyzes the O2-dependent oxidation of 3-mercaptopropionate (3mpa) to produce 3-sulfinopropionic acid (3spa). With one exception, the active site residues of MDO are identical to bacterial cysteine dioxygenase (CDO). Specifically, the CDO Arg-residue (R50) is replaced by Gln (Q67) in MDO. Despite this minor active site perturbation, substrate-specificity of Av MDO is more relaxed as compared to CDO. In order to investigate the relative timing of chemical and non-chemical events in Av MDO catalysis, the pH/D-dependence of steady-state kinetic parameters (kcat and kcat/KM) and viscosity effects are measured using two different substrates [3mpa and l-cysteine (cys)]. The pL-dependent activity of Av MDO in these reactions can be rationalized assuming a diprotic enzyme model in which three ionic forms of the enzyme are present [cationic, E((z+1)); neutral, E(z); and anionic, E((z-1))]. The activities observed for each substrate appear to be dominated by electrostatic interactions within the enzymatic active site. Given the similarity between MDO and the more extensively characterized mammalian CDO, a tentative model for the role of the conserved 'catalytic triad' is proposed.

Keywords: Non-heme mononuclear iron; Proton inventory; Solvent isotope effects; Thiol dioxygenase; Viscosity effects.

MeSH terms

  • 3-Mercaptopropionic Acid / chemistry*
  • Arginine / chemistry
  • Azotobacter vinelandii / enzymology*
  • Bacterial Proteins / chemistry*
  • Catalysis
  • Catalytic Domain
  • Cations
  • Cysteine / chemistry
  • Cysteine Dioxygenase / chemistry
  • Deuterium Oxide
  • Dioxygenases / chemistry*
  • Escherichia coli / chemistry
  • Hydrogen-Ion Concentration
  • Kinetics
  • Molecular Conformation
  • Oxygen / chemistry*
  • Protons
  • Solvents / chemistry
  • Static Electricity
  • Substrate Specificity
  • Viscosity

Substances

  • Bacterial Proteins
  • Cations
  • Protons
  • Solvents
  • Arginine
  • 3-Mercaptopropionic Acid
  • Dioxygenases
  • Cysteine Dioxygenase
  • Deuterium Oxide
  • Cysteine
  • Oxygen