Dynamic ruffling distortion of the heme substrate in non-canonical heme oxygenase enzymes

Dalton Trans. 2016 Jun 14;45(24):10058-67. doi: 10.1039/c6dt00702c.

Abstract

Recent work by several groups has established that MhuD, IsdG, and IsdI are non-canonical heme oxygenases that induce significant out-of-plane ruffling distortions of their heme substrates enroute to mycobilin or staphylobilin formation. However, clear explanations for the observations of "nested" S = ½ VTVH MCD saturation magnetization curves at cryogenic temperatures, and exchange broadened (1)H NMR resonances at physiologically-relevant temperatures have remained elusive. Here, MCD and NMR data have been acquired for F23A and F23W MhuD-heme-CN, in addition to MCD data for IsdI-heme-CN, in order to complete assembly of a library of spectroscopic data for cyanide-inhibited ferric heme with a wide range of ruffling deformations. The spectroscopic data were used to evaluate a number of computational models for cyanide-inhibited ferric heme, which ultimately led to the development of an accurate NEVPT2/CASSCF model. The resulting model has a shallow, double-well potential along the porphyrin ruffling coordinate, which provides clear explanations for the unusual MCD and NMR data. The shallow, double-well potential also implies that MhuD-, IsdG-, and IsdI-bound heme is dynamic, and the functional implications of these dynamics are discussed.

MeSH terms

  • Bacterial Proteins / chemistry*
  • Computational Biology
  • Crystallography, X-Ray
  • Cyanides / chemistry*
  • Heme / antagonists & inhibitors*
  • Heme / chemistry*
  • Heme Oxygenase (Decyclizing) / antagonists & inhibitors*
  • Heme Oxygenase (Decyclizing) / chemistry*
  • Mixed Function Oxygenases / chemistry*
  • Mycobacterium tuberculosis / enzymology
  • Nuclear Magnetic Resonance, Biomolecular
  • Oxygenases / chemistry*
  • Protein Conformation
  • Temperature

Substances

  • Bacterial Proteins
  • Cyanides
  • Heme
  • IsdI protein, Staphylococcus aureus
  • Mixed Function Oxygenases
  • Oxygenases
  • IsdG protein, Staphylococcus aureus
  • Heme Oxygenase (Decyclizing)