Binding of actinomycin D to DNA: evidence for a nonclassical high-affinity binding mode that does not require GpC sites

Proc Natl Acad Sci U S A. 1989 Jun;86(11):3968-72. doi: 10.1073/pnas.86.11.3968.

Abstract

We have employed a combination of temperature-dependent UV absorption spectroscopy, circular dichroism, and batch calorimetry to characterize the binding of actinomycin D to a series of oligomeric DNA duplexes. We find the duplex [d(CGTCGACG)]2 to be unique in its ability to bind actinomycin D strongly despite the absence of a classic GpC site. We present evidence that this non-GpC-containing duplex binds two actinomycin D molecules in an apparently cooperative manner to form a complex that exhibits aberrant spectroscopic and calorimetric behavior. We propose that these observations are consistent with actinomycin D exhibiting a high-affinity, sequence-dependent DNA-binding mode distinct from its classic binding to isolated GpC sites.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Sequence
  • Calorimetry
  • Circular Dichroism
  • DNA*
  • Dactinomycin*
  • Nucleic Acid Conformation
  • Nucleic Acid Denaturation
  • Oligodeoxyribonucleotides*
  • Structure-Activity Relationship
  • Thermodynamics

Substances

  • Oligodeoxyribonucleotides
  • Dactinomycin
  • DNA