Depletion of tyrosyl DNA phosphodiesterase 2 activity enhances etoposide-mediated double-strand break formation and cell killing

DNA Repair (Amst). 2016 Jul:43:38-47. doi: 10.1016/j.dnarep.2016.04.009. Epub 2016 May 7.

Abstract

DNA topoisomerase 2 (Top2) poisons, including common anticancer drugs etoposide and doxorubicin kill cancer cells by stabilizing covalent Top2-tyrosyl-DNA 5'-phosphodiester adducts and DNA double-strand breaks (DSBs). Proteolytic degradation of the covalently attached Top2 leaves a 5'-tyrosylated blocked termini which is removed by tyrosyl DNA phosphodiesterase 2 (TDP2), prior to DSB repair through non-homologous end joining (NHEJ). Thus, TDP2 confers resistance of tumor cells to Top2-poisons by repairing such covalent DNA-protein adducts, and its pharmacological inhibition could enhance the efficacy of Top2-poisons. We discovered NSC111041, a selective inhibitor of TDP2, by optimizing a high throughput screening (HTS) assay for TDP2's 5'-tyrosyl phosphodiesterase activity and subsequent validation studies. We found that NSC111041 inhibits TDP2's binding to DNA without getting intercalated into DNA and enhanced etoposide's cytotoxicity synergistically in TDP2-expressing cells but not in TDP2 depleted cells. Furthermore, NSC111041 enhanced formation of etoposide-induced γ-H2AX foci presumably by affecting DSB repair. Immuno-histochemical analysis showed higher TDP2 expression in a sub-set of different type of tumor tissues. These findings underscore the feasibility of clinical use of suitable TDP2 inhibitors in adjuvant therapy with Top2-poisons for a sub-set of cancer patients with high TDP2 expression.

Keywords: DNA repair; Enzyme assay; High throughput screening; Inhibitor; Molecular probe; NSC111041; TDP2.

MeSH terms

  • Aminoquinolines / pharmacology*
  • Antigens, Neoplasm / genetics
  • Antigens, Neoplasm / metabolism
  • Cell Line, Tumor
  • DNA Adducts / antagonists & inhibitors
  • DNA Adducts / metabolism
  • DNA Breaks, Double-Stranded
  • DNA Repair / drug effects*
  • DNA Topoisomerases, Type II / genetics
  • DNA Topoisomerases, Type II / metabolism
  • DNA, Neoplasm / antagonists & inhibitors
  • DNA, Neoplasm / genetics
  • DNA, Neoplasm / metabolism
  • DNA-Binding Proteins / antagonists & inhibitors*
  • DNA-Binding Proteins / genetics
  • DNA-Binding Proteins / metabolism
  • Drug Synergism
  • Epithelial Cells / drug effects
  • Epithelial Cells / enzymology
  • Epithelial Cells / pathology
  • Etoposide / pharmacology*
  • Gene Expression Regulation, Neoplastic
  • High-Throughput Screening Assays
  • Histones / genetics
  • Histones / metabolism
  • Humans
  • Nuclear Proteins / antagonists & inhibitors*
  • Nuclear Proteins / genetics
  • Nuclear Proteins / metabolism
  • Phosphodiesterase Inhibitors / pharmacology*
  • Phosphoric Diester Hydrolases
  • Poly-ADP-Ribose Binding Proteins
  • Protein Binding
  • Topoisomerase Inhibitors / pharmacology*
  • Transcription Factors / antagonists & inhibitors*
  • Transcription Factors / genetics
  • Transcription Factors / metabolism

Substances

  • Aminoquinolines
  • Antigens, Neoplasm
  • DNA Adducts
  • DNA, Neoplasm
  • DNA-Binding Proteins
  • H2AX protein, human
  • Histones
  • Nuclear Proteins
  • Phosphodiesterase Inhibitors
  • Poly-ADP-Ribose Binding Proteins
  • Topoisomerase Inhibitors
  • Transcription Factors
  • Etoposide
  • Phosphoric Diester Hydrolases
  • TDP2 protein, human
  • DNA Topoisomerases, Type II
  • TOP2A protein, human