Predicting Conformational Disorder

Methods Mol Biol. 2016:1415:265-99. doi: 10.1007/978-1-4939-3572-7_14.

Abstract

In the last two decades, it has become increasingly evident that a large number of proteins are either fully or partially disordered. Intrinsically disordered proteins are ubiquitous proteins that fulfill essential biological functions while lacking a stable 3D structure. Their conformational heterogeneity is encoded at the amino acid sequence level, thereby allowing intrinsically disordered proteins or regions to be recognized based on their sequence properties. The identification of disordered regions facilitates the functional annotation of proteins and is instrumental for delineating boundaries of protein domains amenable to crystallization. This chapter focuses on the methods currently employed for predicting disorder and identifying regions involved in induced folding.

Keywords: Disorder databases and metaservers; Induced folding; Intrinsic disorder; Intrinsically disordered proteins; Intrinsically disordered regions; Prediction methods.

MeSH terms

  • Amino Acid Sequence
  • Computational Biology / methods*
  • Crystallography, X-Ray
  • Databases, Protein
  • Internet
  • Intrinsically Disordered Proteins / chemistry*
  • Models, Molecular
  • Molecular Sequence Annotation
  • Protein Conformation
  • Protein Domains
  • Protein Folding

Substances

  • Intrinsically Disordered Proteins