Thioflavin T as an efficient fluorescence sensor for selective recognition of RNA G-quadruplexes

Sci Rep. 2016 Apr 21:6:24793. doi: 10.1038/srep24793.

Abstract

RNA G-quadruplexes (G4s) play important roles in translational regulation, mRNA processing events and gene expression. Therefore, a fluorescent probe that is capable of efficiently recognizing RNA G-quadruplex structures among other RNA forms is highly desirable. In this study, a water-soluble fluorogenic dye (i.e., Thioflavin T (ThT)) was employed to recognize RNA G-quadruplex structures using UV-Vis absorption spectra, fluorescence spectra and emission lifetime experiments. By stacking on the G-tetrad, the ThT probe exhibited highly specific recognition of RNA G-quadruplex structures with striking fluorescence enhancement compared with other RNA forms. The specific binding demonstrates that ThT is an efficient fluorescence sensor that can distinguish G4 and non-G4 RNA structures.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Benzothiazoles
  • Biosensing Techniques*
  • Fluorescence
  • Fluorescent Dyes*
  • G-Quadruplexes*
  • Molecular Structure
  • RNA / chemistry*
  • Spectrum Analysis
  • Thiazoles / chemistry*

Substances

  • Benzothiazoles
  • Fluorescent Dyes
  • Thiazoles
  • thioflavin T
  • RNA