Adaptor Scaffoldins: An Original Strategy for Extended Designer Cellulosomes, Inspired from Nature

mBio. 2016 Apr 5;7(2):e00083. doi: 10.1128/mBio.00083-16.

Abstract

Designer cellulosomes consist of chimeric cohesin-bearing scaffoldins for the controlled incorporation of recombinant dockerin-containing enzymes. The largest designer cellulosome reported to date is a chimeric scaffoldin that contains 6 cohesins. This scaffoldin represented a technical limit of sorts, since adding another cohesin proved problematic, owing to resultant low expression levels, instability (cleavage) of the scaffoldin polypeptide, and limited numbers of available cohesin-dockerin specificities-the hallmark of designer cellulosomes. Nevertheless, increasing the number of enzymes integrated into designer cellulosomes is critical, in order to further enhance degradation of plant cell wall material. Adaptor scaffoldins comprise an intermediate type of scaffoldin that can both incorporate various enzymes and attach to an additional scaffoldin. Using this strategy, we constructed an efficient form of adaptor scaffoldin that possesses three type I cohesins for enzyme integration, a single type II dockerin for interaction with an additional scaffoldin, and a carbohydrate-binding module for targeting to the cellulosic substrate. In parallel, we designed a hexavalent scaffoldin capable of connecting to the adaptor scaffoldin by the incorporation of an appropriate type II cohesin. The resultant extended designer cellulosome comprised 8 recombinant enzymes-4 xylanases and 4 cellulases-thereby representing a potent enzymatic cocktail for solubilization of natural lignocellulosic substrates. The contribution of the adaptor scaffoldin clearly demonstrated that proximity between the two scaffoldins and their composite set of enzymes is crucial for optimized degradation. After 72 h of incubation, the performance of the extended designer cellulosome was determined to be approximately 70% compared to that of native cellulosomes.

Importance: Plant cell wall residues represent a major source of renewable biomass for the production of biofuels such as ethanol via breakdown to soluble sugars. The natural microbial degradation process, however, is inefficient for achieving cost-effective processes in the conversion of plant-derived biomass to biofuels, either from dedicated crops or human-generated cellulosic wastes. The accumulation of the latter is considered a major environmental pollutant. The development of designer cellulosome nanodevices for enhanced plant cell wall degradation thus has major impacts in the fields of environmental pollution, bioenergy production, and biotechnology in general. The findings reported in this article comprise a true breakthrough in our capacity to produce extended designer cellulosomes via synthetic biology means, thus enabling the assembly of higher-order complexes that can supersede the number of enzymes included in a single multienzyme complex.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cellulose / metabolism
  • Cellulosomes / genetics*
  • Cellulosomes / metabolism*
  • Hydrolysis
  • Protein Binding
  • Protein Interaction Domains and Motifs*
  • Recombinant Proteins / genetics*
  • Recombinant Proteins / metabolism*

Substances

  • Recombinant Proteins
  • Cellulose

Grants and funding

This research was supported by grant no. 1349 from the Israel Science Foundation (ISF) and by the United States-Israel Binational Science Foundation (BSF), Jerusalem, Israel. Additional support was obtained through Israeli Center of Research Excellence funding (I-CORE center no. 152/11) managed by the ISF. We appreciate the support of the European Union through Area NMP.2013.1.1-2: Self-assembly of naturally occurring nanosystems: CellulosomePlus Project no. 604530 and European Union Horizon 2020 contract: Sustainable production of next generation biofuels from waste streams: WASTE2FUELS. E.A.B. is the incumbent of The Maynard I. and Elaine Wishner Chair of Bio-organic Chemistry.