Human Cells Require Non-stop Ribosome Rescue Activity in Mitochondria

PLoS Genet. 2016 Mar 30;12(3):e1005964. doi: 10.1371/journal.pgen.1005964. eCollection 2016 Mar.

Abstract

Bacteria use trans-translation and the alternative rescue factors ArfA (P36675) and ArfB (Q9A8Y3) to hydrolyze peptidyl-tRNA on ribosomes that stall near the 3' end of an mRNA during protein synthesis. The eukaryotic protein ICT1 (Q14197) is homologous to ArfB. In vitro ribosome rescue assays of human ICT1 and Caulobacter crescentus ArfB showed that these proteins have the same activity and substrate specificity. Both ArfB and ICT1 hydrolyze peptidyl-tRNA on nonstop ribosomes or ribosomes stalled with ≤6 nucleotides extending past the A site, but are unable to hydrolyze peptidyl-tRNA when the mRNA extends ≥14 nucleotides past the A site. ICT1 provided sufficient ribosome rescue activity to support viability in C. crescentus cells that lacked both trans-translation and ArfB. Likewise, expression of ArfB protected human cells from death when ICT1 was silenced with siRNA. These data indicate that ArfB and ICT1 are functionally interchangeable, and demonstrate that ICT1 is a ribosome rescue factor. Because ICT1 is essential in human cells, these results suggest that ribosome rescue activity in mitochondria is required in humans.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Caulobacter crescentus / genetics
  • HEK293 Cells
  • Humans
  • Mitochondria / genetics*
  • Mitochondria / metabolism
  • Protein Biosynthesis / genetics*
  • Proteins / genetics*
  • Proteins / metabolism
  • RNA, Messenger / genetics
  • RNA, Transfer, Amino Acyl / genetics
  • RNA-Binding Proteins / genetics
  • Ribosomal Proteins
  • Ribosomes / genetics*
  • Ribosomes / metabolism
  • Xylose / metabolism

Substances

  • MRPL58 protein, human
  • Proteins
  • RNA, Messenger
  • RNA, Transfer, Amino Acyl
  • RNA-Binding Proteins
  • Ribosomal Proteins
  • tRNA, peptidyl-
  • Xylose