Complete genome sequence of Xishuangbanna flavivirus, a novel mosquito-specific flavivirus from China

Arch Virol. 2016 Jun;161(6):1723-7. doi: 10.1007/s00705-016-2827-6. Epub 2016 Mar 21.

Abstract

A new flavivirus, Xishuangbanna flavivirus (XFV), infecting Aedes albopictus mosquitoes in Yunnan Province, China, was isolated and sequenced. The single-stranded RNA genome of 10,884 nt contained two open reading frames (ORFs) encoding the polyprotein and FIFO. The genome had a maximum nucleotide sequence identity of 65 % to Parramatta River virus with coverage of only 27 %. Phylogenetic analysis suggested that this virus is most closely related to recognized classical insect-specific flaviviruses (cISF) and most likely has a similar host range. Sequence comparisons and phylogenetic analysis demonstrated that XFV is a new member of the genus Flavivirus.

MeSH terms

  • Aedes / virology*
  • Animals
  • China
  • Flavivirus / classification
  • Flavivirus / genetics*
  • Flavivirus / isolation & purification
  • Genome, Viral
  • Phylogeny
  • RNA, Viral / genetics
  • Viral Proteins / genetics

Substances

  • RNA, Viral
  • Viral Proteins