Microarray Study of Pathway Analysis Expression Profile Associated with MicroRNA-29a with Regard to Murine Cholestatic Liver Injuries

Int J Mol Sci. 2016 Mar 1;17(3):324. doi: 10.3390/ijms17030324.

Abstract

Accumulating evidence demonstrates that microRNA-29 (miR-29) expression is prominently decreased in patients with hepatic fibrosis, which consequently stimulates hepatic stellate cells' (HSCs) activation. We used a cDNA microarray study to gain a more comprehensive understanding of genome-wide gene expressions by adjusting miR-29a expression in a bile duct-ligation (BDL) animal model.

Methods: Using miR-29a transgenic mice and wild-type littermates and applying the BDL mouse model, we characterized the function of miR-29a with regard to cholestatic liver fibrosis. Pathway enrichment analysis and/or specific validation were performed for differentially expressed genes found within the comparisons.

Results: Analysis of the microarray data identified a number of differentially expressed genes due to the miR-29a transgene, BDL, or both. Additional pathway enrichment analysis revealed that TGF-β signaling had a significantly differential activated pathway depending on the occurrence of miR-29a overexpression or the lack thereof. Furthermore, overexpression was found to elicit changes in Wnt/β-catenin after BDL.

Conclusion: This study verified that an elevated miR-29a level could alleviate liver fibrosis caused by cholestasis. Furthermore, the protective effects of miR-29a correlate with the downregulation of TGF-β and associated with Wnt/β-catenin signal pathway following BDL.

Keywords: TGF-β signaling pathway; Wnt signaling pathway; bile duct ligation; cholestasis; liver fibrosis; miR-29a.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cholestasis / complications*
  • Cholestasis / genetics
  • Cholestasis / metabolism
  • Cholestasis / pathology
  • Intercellular Signaling Peptides and Proteins / analysis
  • Intercellular Signaling Peptides and Proteins / metabolism
  • Liver / metabolism
  • Liver / pathology*
  • Liver Cirrhosis / complications*
  • Liver Cirrhosis / genetics
  • Liver Cirrhosis / metabolism
  • Liver Cirrhosis / pathology
  • Male
  • Mice
  • MicroRNAs / genetics*
  • Signal Transduction*
  • Transcriptome
  • Transforming Growth Factor beta / analysis
  • Transforming Growth Factor beta / metabolism
  • Up-Regulation
  • Wnt Signaling Pathway

Substances

  • Dkk1 protein, mouse
  • Intercellular Signaling Peptides and Proteins
  • MIRN29 microRNA, mouse
  • MicroRNAs
  • Transforming Growth Factor beta