An enantioselective NADP(+)-dependent alcohol dehydrogenase responsible for cooxidative production of (3S)-5-hydroxy-3-methyl-pentanoic acid

Biosci Biotechnol Biochem. 2016 Jun;80(6):1155-63. doi: 10.1080/09168451.2016.1148578. Epub 2016 Feb 29.

Abstract

A soil bacterium, Mycobacterium sp. B-009, is able to grow on racemic 1,2-propanediol (PD). The strain was revealed to oxidize 3-methyl-1,5-pentanediol (MPD) to 5-hydroxy-3-methyl-pentanoic acid (HMPA) during growth on PD. MPD was converted into an almost equimolar amount of the S-form of HMPA (S-HMPA) at 72%ee, suggesting the presence of an enantioselective MPD dehydrogenase (MPD-DH). As expected, an NADP(+)-dependent alcohol dehydrogenase, which catalyzes the initial step of MPD oxidation, was detected and purified from the cell-free extract. This enzyme was suggested to be a homodimeric medium-chain alcohol dehydrogenase/reductase (MDR). The catalytic and kinetic parameters indicated that MPD is the most suitable substrate for the enzyme. The enzyme was encoded by a 1047-bp gene (mpd1) and several mycobacterial strains were found to have putative MDR genes similar to mpd1. In a phylogenetic tree, MPD-DH formed an independent clade together with the putative MDR of Mycobacterium neoaurum, which produces opportunistic infections.

Keywords: (3S)-5-Hydroxy-3-methyl-pentanoic acid; 3-Metyl-1,5-pentandiol; Alcohol dehydrogenase; Cooxidation; Mycobacterium.

MeSH terms

  • Alcohol Oxidoreductases / chemistry
  • Alcohol Oxidoreductases / genetics
  • Alcohol Oxidoreductases / metabolism*
  • Amino Acid Sequence
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism*
  • Biocatalysis
  • Gene Expression
  • Glycols / chemistry
  • Glycols / metabolism*
  • Hydrogen-Ion Concentration
  • Kinetics
  • Mycobacterium / classification
  • Mycobacterium / enzymology*
  • Mycobacterium / genetics
  • Open Reading Frames
  • Oxidation-Reduction
  • Pentanes / chemistry
  • Pentanes / metabolism
  • Pentanoic Acids / chemistry
  • Pentanoic Acids / metabolism*
  • Phylogeny
  • Propylene Glycol / chemistry
  • Propylene Glycol / metabolism
  • Protein Multimerization
  • Sequence Alignment
  • Soil Microbiology*
  • Stereoisomerism
  • Substrate Specificity

Substances

  • Bacterial Proteins
  • Glycols
  • Pentanes
  • Pentanoic Acids
  • Propylene Glycol
  • Alcohol Oxidoreductases
  • alcohol dehydrogenase (NAD(P)+)