The role of ATP-dependent machines in regulating genome topology

Curr Opin Struct Biol. 2016 Feb:36:85-96. doi: 10.1016/j.sbi.2016.01.006. Epub 2016 Jan 29.

Abstract

All cells must copy and express genes in accord with internal and external cues. The proper timing and response of such events relies on the active control of higher-order genomic organization. Cells use ATP-dependent molecular machines to alter the local and global topology of DNA so as to promote and counteract the persistent effects of transcription and replication. X-ray crystallography and electron microscopy, coupled with biochemical and single molecule methods are continuing to provide a wealth of mechanistic information on how DNA remodeling factors are employed to dynamically shape and organize the genome.

Publication types

  • Research Support, N.I.H., Extramural
  • Review

MeSH terms

  • Adenosine Triphosphate / chemistry
  • Adenosine Triphosphate / metabolism*
  • Chromatin Assembly and Disassembly
  • DNA Helicases / chemistry
  • DNA Helicases / metabolism
  • DNA Replication / physiology*
  • DNA Topoisomerases, Type I / chemistry
  • DNA Topoisomerases, Type I / metabolism
  • DNA-Directed DNA Polymerase / chemistry
  • DNA-Directed DNA Polymerase / metabolism
  • Genome*
  • Homeostasis
  • Nucleic Acid Conformation
  • Protein Binding
  • Protein Conformation
  • Structure-Activity Relationship

Substances

  • Adenosine Triphosphate
  • DNA-Directed DNA Polymerase
  • DNA Helicases
  • DNA Topoisomerases, Type I