Homology modeling and docking studies of ENPP4: a BCG activated tumoricidal macrophage protein

Lipids Health Dis. 2016 Jan 28:15:19. doi: 10.1186/s12944-016-0189-4.

Abstract

Background: The 3D structure and functions of ENPP4, a protein expressed on the surface of Bacillus Calmette-Guerin (BCG)-activated macrophages, are unknown. In this study, we analyzed the 3D structure of ENPP4 and determined its tumoricidal effects on MCA207 cells.

Results: Homology modeling showed that Arg305, Tyr341, Asn291, and Asn295 are important residues in substrate, adenosine triphosphate (ATP), binding. A molecular dynamics study was also carried out to study the stability of ENPP4 (including zinc atoms) as well as its ligand-enzyme complex. BCG increased ENPP4 expression in macrophages, and specific blocking of ENPP4 in BCG-activated macrophages (BAMs) significantly reduced their cytotoxicity against MCA207 cells.

Conclusions: These results indicate that zinc remains inside the ENPP4 protein, a BCG activated tumoricidal macrophage protein, throughout the simulation. Important information for the design of new inhibitors was obtained.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Antibodies / metabolism
  • Catalytic Domain
  • DNA, Complementary / genetics
  • Female
  • Macrophages / metabolism*
  • Mice, Inbred C57BL
  • Molecular Docking Simulation*
  • Molecular Sequence Data
  • Mycobacterium bovis / physiology*
  • Phosphoric Diester Hydrolases / chemistry*
  • Phosphoric Diester Hydrolases / metabolism
  • Phylogeny
  • Recombinant Proteins / metabolism
  • Reproducibility of Results
  • Sequence Alignment
  • Software
  • Structural Homology, Protein*
  • Substrate Specificity

Substances

  • Antibodies
  • DNA, Complementary
  • Recombinant Proteins
  • Phosphoric Diester Hydrolases