Draft Genome Sequences of Gammaproteobacterial Methanotrophs Isolated from Marine Ecosystems

James D Flynn; Hisako Hirayama; Yasuyoshi Sakai; Peter F Dunfield; Martin G Klotz; Claudia Knief; Huub J M Op den Camp; Mike S M Jetten; Valentina N Khmelenina; Yuri A Trotsenko; J Colin Murrell; Jeremy D Semrau; Mette M Svenning; Lisa Y Stein; Nikos Kyrpides; Nicole Shapiro; Tanja Woyke; Françoise Bringel; Stéphane Vuilleumier; Alan A DiSpirito; Marina G Kalyuzhnaya

doi:10.1128/genomeA.01629-15

Draft Genome Sequences of Gammaproteobacterial Methanotrophs Isolated from Marine Ecosystems

Genome Announc. 2016 Jan 21;4(1):e01629-15. doi: 10.1128/genomeA.01629-15.

Authors

James D Flynn¹, Hisako Hirayama², Yasuyoshi Sakai³, Peter F Dunfield⁴, Martin G Klotz⁵, Claudia Knief⁶, Huub J M Op den Camp⁷, Mike S M Jetten⁷, Valentina N Khmelenina⁸, Yuri A Trotsenko⁸, J Colin Murrell⁹, Jeremy D Semrau¹⁰, Mette M Svenning¹¹, Lisa Y Stein¹², Nikos Kyrpides¹³, Nicole Shapiro¹³, Tanja Woyke¹³, Françoise Bringel¹⁴, Stéphane Vuilleumier¹⁴, Alan A DiSpirito¹⁵, Marina G Kalyuzhnaya¹⁶

Affiliations

¹ San Diego State University, Department of Biology, San Diego, California, USA.
² Department of Subsurface Geobiological Analysis and Research, Japan Agency for Marine-Earth Science & Technology (JAMSTEC), Yokosuka, Kanagawa, Japan.
³ Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo-ku, Japan.
⁴ Department of Biological Sciences, University of Calgary, Calgary, Alberta, Canada.
⁵ Division of Math & Natural Sciences, Queens College in the City University of New York, Flushing, New York, USA.
⁶ Institute of Crop Science and Resource Conservation-Molecular Biology of the Rhizosphere, University of Bonn, Bonn, Germany.
⁷ Department of Microbiology, IWWR, Faculty of Science, Radboud University, Nijmegen, The Netherlands.
⁸ GK Skryabin Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Sciences, Pushchino, Russian Federation.
⁹ School of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, United Kingdom.
¹⁰ Department of Civil and Environmental Engineering, The University of Michigan, Ann Arbor, Michigan, USA.
¹¹ Department of Arctic and Marine Biology, UiT, The Arctic University of Norway, Tromsø, Norway.
¹² Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada.
¹³ DOE Joint Genome Institute, Walnut Creek, California, USA.
¹⁴ Department of Microbiology, Genomics and the Environment, Université de Strasbourg, UMR 7156 CNRS, Strasbourg, France.
¹⁵ Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Ames, Iowa, USA.
¹⁶ San Diego State University, Department of Biology, San Diego, California, USA mkalyuzhnaya@mail.sdsu.edu.

Abstract

The genome sequences of Methylobacter marinus A45, Methylobacter sp. strain BBA5.1, and Methylomarinum vadi IT-4 were obtained. These aerobic methanotrophs are typical members of coastal and hydrothermal vent marine ecosystems.