Polydopamine (PDA), a mussel adhesive-inspired biomimetic polymer, has attracted tremendous attention owing to its extremely versatile adhesion properties, facile aqueous coating process, capability of self-assembly to form nanostructures, and abundant surface functional groups for secondary modification. PDA is also a fantastic carbon source because it gives nitrogen (N)-doped graphite-like carbon in high yield, and the carbonized PDA (C-PDA) thin coatings have similar properties to those of N-doped multilayered graphene, i.e., they exhibit high electrical conductivity, and good electrochemical and mechanical properties. In comparison with other carbon sources, an outstanding feature of PDA lies in its ease of integration with inorganic nanostructures and capability for easy tailoring the structure and morphology of the resultant composite nanostructures. In this article, different routes for the preparation of C-PDA-based composite nanostructures, such as carbon/metal oxide and carbon/Si hollow, mesoporous, core-shell, yolk-shell nanostructures, are introduced with typical examples. The structures, morphologies and properties of the C-PDA-based composite nanostructures are also reviewed, and their potential applications in various engineering fields, such as energy storage, solar water splitting, flexible electronics, catalysis, sensing and environmental engineering, are highlighted. Finally a future outlook for this fascinating composite-nanostructure enabler is also presented.