3D Fast Automatic Segmentation of Kidney Based on Modified AAM and Random Forest

IEEE Trans Med Imaging. 2016 Jun;35(6):1395-407. doi: 10.1109/TMI.2015.2512606. Epub 2016 Jan 5.

Abstract

In this paper, a fully automatic method is proposed to segment the kidney into multiple components: renal cortex, renal column, renal medulla and renal pelvis, in clinical 3D CT abdominal images. The proposed fast automatic segmentation method of kidney consists of two main parts: localization of renal cortex and segmentation of kidney components. In the localization of renal cortex phase, a method which fully combines 3D Generalized Hough Transform (GHT) and 3D Active Appearance Models (AAM) is applied to localize the renal cortex. In the segmentation of kidney components phase, a modified Random Forests (RF) method is proposed to segment the kidney into four components based on the result from localization phase. During the implementation, a multithreading technology is applied to speed up the segmentation process. The proposed method was evaluated on a clinical abdomen CT data set, including 37 contrast-enhanced volume data using leave-one-out strategy. The overall true-positive volume fraction and false-positive volume fraction were 93.15%, 0.37% for renal cortex segmentation; 83.09%, 0.97% for renal column segmentation; 81.92%, 0.55% for renal medulla segmentation; and 80.28%, 0.30% for renal pelvis segmentation, respectively. The average computational time of segmenting kidney into four components took 20 seconds.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Decision Trees*
  • Humans
  • Imaging, Three-Dimensional / methods*
  • Kidney / diagnostic imaging*
  • Machine Learning*
  • Models, Theoretical
  • Radiography, Abdominal
  • Tomography, X-Ray Computed