The lycaenid butterfly, Shijimiaeoides divina (Lepidoptera: Lycaenidae), has been listed in Korea as a class II endangered wild species since 2012. Therefore, the mitogenome sequence is necessary to better understand genomic characteristics of the species. The 15 259-bp complete mitochondrial genome of the species consists of a typical set of genes, including 13 protein-coding genes, 2 rRNA genes, and 22 tRNA genes, and 1 major non-coding AT-rich region, with an arrangement typical of Ditrysia (trnM-trnI-trnQ between the AT-rich region and ND2). The 379-bp A + T-rich region has a trnK-like sequence. Phylogenetic analysis using 13 protein-coding genes of the families Lycaenidae and Riodinidae with outgroups from species in Nymphalidae indicates that each family is a strong monophyletic group and that S. divina, belonging to Polyommatinae, is correctly placed as a sister to the within-subfamilial species Cupido argiades with the highest support.
Keywords: Endangered species; Shijimiaeoides divina; mitochondrial genome.