Complete mitochondrial genome of the Yellow-spotted skate Okamejei hollandi (Rajiformes: Rajidae)

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Jul;27(4):2883-4. doi: 10.3109/19401736.2015.1060419. Epub 2015 Dec 24.

Abstract

The complete mitochondrial genome of the Yellow-spotted skate Okamejei hollandi was determined in this study. It is 16,974 bp in length and contains 13 protein-coding genes, two rRNA genes, 22 tRNA genes, and one putative control region. The overall base composition is 30.5% A, 27.8% C, 14.0% G, and 27.8% T. There are 28 bp short intergenic spaces located in 12 gene junctions and 31 bp overlaps located in nine gene junctions in the whole mitogenome. Two start codons (ATG and GTG) and two stop codons (TAG and TAA/T) were used in the protein-coding genes. The lengths of 22 tRNA genes range from 68 (tRNA-Ser2) to 75 (tRNA-Leu1) bp. The origin of L-strand replication (OL) sequence (37 bp) was identified between the tRNA-Asn and tRNA-Cys genes. The control region is 1311 bp in length with high A + T and poor G content.

Keywords: Mitogenome; Okamejei hollandi; Rajiformes.

MeSH terms

  • Animals
  • Base Composition / genetics
  • Codon, Initiator / genetics
  • Codon, Terminator / genetics
  • DNA, Mitochondrial / genetics
  • Genes, Mitochondrial / genetics
  • Genome, Mitochondrial / genetics*
  • Open Reading Frames / genetics
  • RNA, Transfer / genetics
  • Sequence Analysis, DNA
  • Skates, Fish / genetics*

Substances

  • Codon, Initiator
  • Codon, Terminator
  • DNA, Mitochondrial
  • RNA, Transfer