Unusual substrate specificity of the peptidoglycan MurE ligase from Erysipelothrix rhusiopathiae

Biochimie. 2016 Feb:121:209-18. doi: 10.1016/j.biochi.2015.12.006. Epub 2015 Dec 14.

Abstract

Erysipelothrix rhusiopathiae is a Gram-positive bacterium pathogenic to many species of birds and mammals, including humans. The main feature of its peptidoglycan is the presence of l-alanine at position 3 of the peptide stem. In the present work, we cloned the murE gene from E. rhusiopathiae and purified the corresponding protein as His6-tagged form. Enzymatic assays showed that E. rhusiopathiae MurE was indeed an l-alanine-adding enzyme. Surprisingly, it was also able, although to a lesser extent, to add meso-diaminopimelic acid, the amino acid found at position 3 in many Gram-negative bacteria, Bacilli and Mycobacteria. Sequence alignment of MurE enzymes from E. rhusiopathiae and Escherichia coli revealed that the DNPR motif that is characteristic of meso-diaminopimelate-adding enzymes was replaced by HDNR. The role of the latter motif in the interaction with l-alanine and meso-diaminopimelic acid was demonstrated by site-directed mutagenesis experiments and the construction of a homology model. The overexpression of the E. rhusiopathiae murE gene in E. coli resulted in the incorporation of l-alanine at position 3 of the peptide part of peptidoglycan.

Keywords: Erysipelothrix rhusiopathiae; MurE; Peptidoglycan; l-alanine-adding enzyme; meso-diaminopimelate-adding enzyme.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Erysipelothrix / enzymology*
  • Escherichia coli / enzymology
  • Escherichia coli / genetics
  • Peptide Synthases / genetics*
  • Peptide Synthases / metabolism*
  • Peptidoglycan / metabolism
  • Substrate Specificity

Substances

  • Peptidoglycan
  • Peptide Synthases