Regulation of neural gene transcription by optogenetic inhibition of the RE1-silencing transcription factor

Proc Natl Acad Sci U S A. 2016 Jan 5;113(1):E91-100. doi: 10.1073/pnas.1507355112. Epub 2015 Dec 23.

Abstract

Optogenetics provides new ways to activate gene transcription; however, no attempts have been made as yet to modulate mammalian transcription factors. We report the light-mediated regulation of the repressor element 1 (RE1)-silencing transcription factor (REST), a master regulator of neural genes. To tune REST activity, we selected two protein domains that impair REST-DNA binding or recruitment of the cofactor mSin3a. Computational modeling guided the fusion of the inhibitory domains to the light-sensitive Avena sativa light-oxygen-voltage-sensing (LOV) 2-phototrophin 1 (AsLOV2). By expressing AsLOV2 chimeras in Neuro2a cells, we achieved light-dependent modulation of REST target genes that was associated with an improved neural differentiation. In primary neurons, light-mediated REST inhibition increased Na(+)-channel 1.2 and brain-derived neurotrophic factor transcription and boosted Na(+) currents and neuronal firing. This optogenetic approach allows the coordinated expression of a cluster of genes impinging on neuronal activity, providing a tool for studying neuronal physiology and correcting gene expression changes taking place in brain diseases.

Keywords: AsLOV2; REST/NRSF; gene transcription; molecular dynamics; optogenetics.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Avena / genetics
  • Cell Line, Tumor
  • Chromatin / metabolism
  • DNA / chemistry
  • Electrophoretic Mobility Shift Assay
  • Gene Expression Regulation*
  • Mice
  • Neurons / metabolism*
  • Optogenetics / methods*
  • Plant Proteins / genetics
  • Protein Binding
  • Protein Structure, Tertiary
  • Recombinant Fusion Proteins / genetics
  • Recombinant Fusion Proteins / metabolism
  • Repressor Proteins / antagonists & inhibitors*
  • Repressor Proteins / chemistry
  • Repressor Proteins / genetics*
  • Transcription, Genetic
  • Transduction, Genetic

Substances

  • Chromatin
  • Plant Proteins
  • RE1-silencing transcription factor
  • Recombinant Fusion Proteins
  • Repressor Proteins
  • DNA