Exome Sequencing Identifies Pathogenic and Modifier Mutations in a Child With Sporadic Dilated Cardiomyopathy

J Am Heart Assoc. 2015 Dec 9;4(12):e002443. doi: 10.1161/JAHA.115.002443.

Abstract

Background: Idiopathic dilated cardiomyopathy (DCM) is typically diagnosed in adulthood, yet familial cases exhibit variable age-dependent penetrance and a subset of patients develop sporadic DCM in childhood. We sought to discover the molecular basis of sporadic DCM in an 11-year-old female with severe heart failure necessitating cardiac transplantation.

Methods and results: Parental echocardiograms excluded asymptomatic DCM. Whole exome sequencing was performed on the family trio and filtered for rare, deleterious, recessive, and de novo variants. Of the 8 candidate genes identified, only 2 had a role in cardiac physiology. A de novo missense mutation in TNNT2 was identified, previously reported and functionally validated in familial DCM with markedly variable penetrance. Additionally, recessive compound heterozygous truncating mutations were identified in XIRP2, a member of the ancient Xin gene family, which governs intercalated disc (ICD) maturation. Histomorphological analysis of explanted heart tissue revealed misregistration, mislocalization, and shortening of ICDs, findings similar to Xirp2(-/-) mice.

Conclusions: The synergistic effects of TNNT2 and XIRP2 mutations, resulting in perturbed sarcomeric force generation and transmission, respectively, would account for an early-onset heart failure phenotype. Whereas the importance of Xin proteins in cardiac development has been well established in animal models, this study implicates XIRP2 as a novel modifier gene in the pathogenesis of DCM.

Keywords: dilated cardiomyopathy; genetics; heart failure; pediatrics; whole exome sequencing.

Publication types

  • Case Reports
  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cardiomyopathy, Dilated / genetics*
  • Cardiomyopathy, Dilated / pathology
  • Child
  • DNA-Binding Proteins / genetics*
  • Exome / genetics
  • Female
  • Heart Ventricles / pathology
  • Heart Ventricles / ultrastructure
  • Heterozygote
  • Humans
  • LIM Domain Proteins / genetics*
  • Male
  • Mice
  • Microscopy, Electron, Transmission
  • Mutation, Missense / genetics*
  • Nuclear Proteins / genetics*
  • Oligonucleotide Array Sequence Analysis
  • Pedigree
  • Sequence Analysis, DNA
  • Troponin T / genetics*

Substances

  • DNA-Binding Proteins
  • LIM Domain Proteins
  • Nuclear Proteins
  • TNNT2 protein, human
  • Troponin T
  • XIRP2 protein, human

Supplementary concepts

  • Familial dilated cardiomyopathy