Molecular Dynamics Simulations of Insulin: Elucidating the Conformational Changes that Enable Its Binding

PLoS One. 2015 Dec 2;10(12):e0144058. doi: 10.1371/journal.pone.0144058. eCollection 2015.

Abstract

A sequence of complex conformational changes is required for insulin to bind to the insulin receptor. Recent experimental evidence points to the B chain C-terminal (BC-CT) as the location of these changes in insulin. Here, we present molecular dynamics simulations of insulin that reveal new insights into the structural changes occurring in the BC-CT. We find three key results: 1) The opening of the BC-CT is inherently stochastic and progresses through an open and then a "wide-open" conformation--the wide-open conformation is essential for receptor binding, but occurs only rarely. 2) The BC-CT opens with a zipper-like mechanism, with a hinge at the Phe24 residue, and is maintained in the dominant closed/inactive state by hydrophobic interactions of the neighboring Tyr26, the critical residue where opening of the BC-CT (activation of insulin) is initiated. 3) The mutation Y26N is a potential candidate as a therapeutic insulin analogue. Overall, our results suggest that the binding of insulin to its receptor is a highly dynamic and stochastic process, where initial docking occurs in an open conformation and full binding is facilitated through interactions of insulin receptor residues with insulin in its wide-open conformation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites / genetics*
  • Insulin / genetics
  • Insulin / metabolism*
  • Molecular Dynamics Simulation
  • Mutation / genetics
  • Protein Binding / genetics*
  • Protein Conformation*
  • Receptor, Insulin / metabolism

Substances

  • Insulin
  • Receptor, Insulin

Grants and funding

The authors have no support or funding to report.