High-speed DNA-based rolling motors powered by RNase H

Nat Nanotechnol. 2016 Feb;11(2):184-90. doi: 10.1038/nnano.2015.259. Epub 2015 Nov 30.

Abstract

DNA-based machines that walk by converting chemical energy into controlled motion could be of use in applications such as next-generation sensors, drug-delivery platforms and biological computing. Despite their exquisite programmability, DNA-based walkers are challenging to work with because of their low fidelity and slow rates (∼1 nm min(-1)). Here we report DNA-based machines that roll rather than walk, and consequently have a maximum speed and processivity that is three orders of magnitude greater than the maximum for conventional DNA motors. The motors are made from DNA-coated spherical particles that hybridize to a surface modified with complementary RNA; the motion is achieved through the addition of RNase H, which selectively hydrolyses the hybridized RNA. The spherical motors can move in a self-avoiding manner, and anisotropic particles, such as dimerized or rod-shaped particles, can travel linearly without a track or external force. We also show that the motors can be used to detect single nucleotide polymorphism by measuring particle displacement using a smartphone camera.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Computers, Molecular
  • DNA / chemistry*
  • DNA / metabolism
  • DNA / ultrastructure
  • Drug Delivery Systems
  • Molecular Motor Proteins / chemistry*
  • Molecular Motor Proteins / metabolism
  • Molecular Motor Proteins / ultrastructure
  • Nanotechnology / methods*
  • Ribonuclease H / chemistry
  • Ribonuclease H / metabolism*

Substances

  • Molecular Motor Proteins
  • DNA
  • Ribonuclease H