The Functional SNPs in the 5' Regulatory Region of the Porcine PPARD Gene Have Significant Association with Fat Deposition Traits

PLoS One. 2015 Nov 24;10(11):e0143734. doi: 10.1371/journal.pone.0143734. eCollection 2015.

Abstract

Peroxisome proliferator-activated receptor delta (PPARD) is a key regulator of lipid metabolism, insulin sensitivity, cell proliferation and differentiation. In this study, we identified two Single Nucleotide Polymorphisms (SNPs, g.1015 A>G and g.1018 T>C) constituting four haplotypes (GT, GC, AC and AT) in the 5' regulatory region of porcine PPARD gene. Functional analysis of the four haplotypes showed that the transcriptional activity of the PPARD promoter fragment carrying haplotype AC was significantly lower than that of the other haplotypes in 3T3-L1, C2C12 and PK-15 cells, and haplotype AC had the lowest binding capacities to the nuclear extracts. Transcription factor 7-like 2 (TCF7L2) enhanced the transcription activities of promoter fragments of PPARD gene carrying haplotypes GT, GC and AT in C2C12 and 3T3-L1 cells, and increased the protein expression of PPARD gene in C2C12 myoblasts. TCF7L2 differentially bound to the four haplotypes, and the binding capacity of TCF7L2 to haplotype AC was the lowest. There were significant associations between -655A/G and fat deposition traits in three pig populations including the Large White × Meishan F2 pigs, France and American Large White pigs. Pigs with genotype GG had significantly higher expression of PPARD at both mRNA and protein level than those with genotype AG. These results strongly suggested that the SNPs in 5' regulatory region of PPARD genes had significant impact on pig fat deposition traits.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 3T3-L1 Cells
  • Animals
  • Cell Line
  • Genotype
  • Haplotypes / genetics
  • Lipid Metabolism / genetics*
  • Mice
  • PPAR delta / genetics*
  • Polymorphism, Single Nucleotide / genetics*
  • Regulatory Sequences, Nucleic Acid / genetics
  • Swine

Substances

  • PPAR delta

Grants and funding

The study was financially supported by the Key National High Technology Development Project of China (Grant No. 2011AA100301), the National Key Technology Support Program of China (Grant No. 2014BAD20B01), the Agricultural Innovation Fund of Hubei Province (Grant No. 2007-620), the Fundamental Research Funds for the Central Universities (Grant No. 2014PY038) and the Key Project of Science and Technology of Zhejiang Province (Grant No. 2014C02010). The last funder is Tianpeng Group. The funder provided support in the form of salaries for authors [ZZ, YM, HM, LW, GW], but did not have any additional role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript.