Overall 20 surface water samples were collected from the Yangtze River, the Wangyu River and the Gonghu Bay (Lake Taihu) to clarify the pollution characteristics of nitrogen and phosphorus during 2 sample stages of "Water Transfers on Lake Taihu from the Yangtze River" in August and December of 2013 respectively. The results showed that the mass concentrations of NO2- -N, NO3- -N, NH4+ -N and TN in the Gonghu Bay were lower than those of the Yangtze River and Wangyu River during the 2 water transfer processes. However, there was higher level of DON content in the Gonghu Bay than that of the Yangtze River and Wangyu River. The percentages of various N species showed that NO3- -N was the major N species in the Yangtze River and Wangyu River during the 2 water transfer processes. TP contents in samples collected from the Yangtze River displayed a constant trend compared with the Wangyu River. However, the percentages of various P species were different with each other during the 2 water transfer processes. Mass concentrations of DON and TP in surface water in August were higher than those in December and the contents of NO3- -N and TDP were lower in August than those in December. In general, NO3- -N and TPP were the main N and P species in Wangyu River from the Yangtze River. NO3- -N, PO4(3-) -P and TPP were the main N and P species in Gonghu Bay from Wangyu River during the 2 water transfer processes.