Electrochemical evidence that pyranopterin redox chemistry controls the catalysis of YedY, a mononuclear Mo enzyme

Proc Natl Acad Sci U S A. 2015 Nov 24;112(47):14506-11. doi: 10.1073/pnas.1516869112. Epub 2015 Nov 11.

Abstract

A long-standing contradiction in the field of mononuclear Mo enzyme research is that small-molecule chemistry on active-site mimic compounds predicts ligand participation in the electron transfer reactions, but biochemical measurements only suggest metal-centered catalytic electron transfer. With the simultaneous measurement of substrate turnover and reversible electron transfer that is provided by Fourier-transformed alternating-current voltammetry, we show that Escherichia coli YedY is a mononuclear Mo enzyme that reconciles this conflict. In YedY, addition of three protons and three electrons to the well-characterized "as-isolated" Mo(V) oxidation state is needed to initiate the catalytic reduction of either dimethyl sulfoxide or trimethylamine N-oxide. Based on comparison with earlier studies and our UV-vis redox titration data, we assign the reversible one-proton and one-electron reduction process centered around +174 mV vs. standard hydrogen electrode at pH 7 to a Mo(V)-to-Mo(IV) conversion but ascribe the two-proton and two-electron transition occurring at negative potential to the organic pyranopterin ligand system. We predict that a dihydro-to-tetrahydro transition is needed to generate the catalytically active state of the enzyme. This is a previously unidentified mechanism, suggested by the structural simplicity of YedY, a protein in which Mo is the only metal site.

Keywords: Fourier-transformed alternating-current voltammetry; YedY; mononuclear molybdenum enzyme; protein film electrochemistry; pyranopterin.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Catalysis
  • Catalytic Domain
  • Electrochemistry
  • Escherichia coli Proteins / chemistry*
  • Oxidation-Reduction
  • Oxidoreductases / chemistry*
  • Pterins / chemistry*

Substances

  • Escherichia coli Proteins
  • Pterins
  • pyranopterin
  • Oxidoreductases
  • YedY protein, E coli