Analytical ultracentrifugation: A versatile tool for the characterisation of macromolecular complexes in solution

Methods. 2016 Feb 15:95:55-61. doi: 10.1016/j.ymeth.2015.11.006. Epub 2015 Nov 10.

Abstract

Analytical ultracentrifugation, an early technique developed for characterizing quantitatively the solution properties of macromolecules, remains a powerful aid to structural biologists in their quest to understand the formation of biologically important protein complexes at the molecular level. Treatment of the basic tenets of the sedimentation velocity and sedimentation equilibrium variants of analytical ultracentrifugation is followed by considerations of the roles that it, in conjunction with other physicochemical procedures, has played in resolving problems encountered in the delineation of complex formation for three biological systems - the cytoplasmic dynein complex, mitogen-activated protein kinase (ERK2) self-interaction, and the terminal catalytic complex in selenocysteine synthesis.

Keywords: Analytical ultracentrifugation; Catalytic complex in selenocysteine synthesis; Cytoplasmic dynein complex; Mitogen-activated protein kinase (ERK2); Sedimentation equilibrium; Sedimentation velocity; SepSecS–tRNA(Sec) interaction.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Amino Acyl-tRNA Synthetases / chemistry
  • Amino Acyl-tRNA Synthetases / isolation & purification*
  • Amino Acyl-tRNA Synthetases / metabolism
  • Cytoplasmic Dyneins / chemistry
  • Cytoplasmic Dyneins / isolation & purification*
  • Cytoplasmic Dyneins / metabolism
  • Humans
  • Macromolecular Substances / isolation & purification
  • Mitogen-Activated Protein Kinase 1 / chemistry
  • Mitogen-Activated Protein Kinase 1 / isolation & purification*
  • Mitogen-Activated Protein Kinase 1 / metabolism
  • Mitogen-Activated Protein Kinases / chemistry
  • Mitogen-Activated Protein Kinases / isolation & purification*
  • Mitogen-Activated Protein Kinases / metabolism
  • Phosphorylation
  • RNA, Transfer / chemistry
  • RNA, Transfer / isolation & purification
  • RNA, Transfer / metabolism
  • Selenocysteine / biosynthesis
  • Solutions
  • Ultracentrifugation / instrumentation
  • Ultracentrifugation / methods*

Substances

  • Macromolecular Substances
  • Solutions
  • Selenocysteine
  • RNA, Transfer
  • MAPK1 protein, human
  • Mitogen-Activated Protein Kinase 1
  • Mitogen-Activated Protein Kinases
  • Cytoplasmic Dyneins
  • Amino Acyl-tRNA Synthetases
  • O-phosphoseryl-tRNA:selenocysteinyl-tRNA synthase, human