Electron Microscopy and Image Processing: Essential Tools for Structural Analysis of Macromolecules

Curr Protoc Protein Sci. 2015 Nov 2:82:17.2.1-17.2.61. doi: 10.1002/0471140864.ps1702s82.

Abstract

Macromolecular electron microscopy typically depicts the structures of macromolecular complexes ranging from ∼200 kDa to hundreds of MDa. The amount of specimen required, a few micrograms, is typically 100 to 1000 times less than needed for X-ray crystallography or nuclear magnetic resonance spectroscopy. Micrographs of frozen-hydrated (cryogenic) specimens portray native structures, but the original images are noisy. Computational averaging reduces noise, and three-dimensional reconstructions are calculated by combining different views of free-standing particles ("single-particle analysis"). Electron crystallography is used to characterize two-dimensional arrays of membrane proteins and very small three-dimensional crystals. Under favorable circumstances, near-atomic resolutions are achieved. For structures at somewhat lower resolution, pseudo-atomic models are obtained by fitting high-resolution components into the density. Time-resolved experiments describe dynamic processes. Electron tomography allows reconstruction of pleiomorphic complexes and subcellular structures and modeling of macromolecules in their cellular context. Significant information is also obtained from metal-coated and dehydrated specimens.

Keywords: cryo-electron microscopy; cryogenic electron microscopy; direct electron detector; electron cryo-microscopy; electron crystallography; electron tomography; frozen-hydrated specimen; immunolabeling; macromolecular complex; metal shadowing; negative stain; single-particle analysis; three-dimensional electron microscopy; three-dimensional image reconstruction; tomography; transmission electron microscopy; two-dimensional crystal; vitreous ice.

MeSH terms

  • Animals
  • Hand / diagnostic imaging
  • Hemiptera
  • Humans
  • Image Processing, Computer-Assisted / methods*
  • Imaging, Three-Dimensional
  • Macromolecular Substances / ultrastructure*
  • Microscopy, Electron / methods*
  • Molecular Imaging / methods*
  • Radiography

Substances

  • Macromolecular Substances