Draft genome sequences of three chemically rich actinomycetes isolated from Mediterranean sponges

Mar Genomics. 2015 Dec:24 Pt 3:285-7. doi: 10.1016/j.margen.2015.10.003. Epub 2015 Oct 20.

Abstract

Metabolomic analysis has shown the chemical richness of the sponge-associated actinomycetes Streptomyces sp. SBT349, Nonomureae sp. SBT364, and Nocardiopsis sp. SBT366. The genomes of these actinomycetes were sequenced and the genomic potential for secondary metabolism was evaluated. Their draft genomes have sizes of 8.0, 10, and 5.8 Mb having 687, 367, and 179 contigs with a GC content of 71.6, 70.7, and 72.7%, respectively. Moreover, antiSMASH 3.0 predicted 108, 149, and 75 secondary metabolite gene clusters, respectively which highlight the metabolic capacity of the three actinomycete species to produce diverse classes of natural products.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Actinobacteria / genetics*
  • Actinobacteria / isolation & purification*
  • Actinobacteria / metabolism
  • Animals
  • DNA, Bacterial / genetics
  • Gene Expression Regulation, Bacterial
  • Genome, Bacterial*
  • Molecular Sequence Data
  • Porifera / microbiology*
  • RNA, Bacterial / genetics
  • Streptomyces / genetics*
  • Streptomyces / isolation & purification*
  • Streptomyces / metabolism

Substances

  • DNA, Bacterial
  • RNA, Bacterial

Associated data

  • GENBANK/LAVK01000000
  • GENBANK/LAVL01000000
  • GENBANK/LAVM0100000