Complete mitochondrial genome of the speckled dace Rhinichthys osculus, a widely distributed cyprinid minnow of western North America

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Nov;27(6):4416-4418. doi: 10.3109/19401736.2015.1089551. Epub 2015 Oct 21.

Abstract

The speckled dace Rhinichthys osculus (order Cypriniformes), also known as the carpita pinta, is a small cyprinid minnow native to western North America. Here, we report the sequencing of the full mitochondrial genome (mitogenome) of R. osculus from a male fish collected from the Amargosa River Canyon in eastern California, USA. The assembled mitogenome is 16 658 base pair (bp) nucleotides, and encodes 13 protein-coding genes, and includes both a 12S and a 16S rRNA, 22 tRNAs, and a 985 bp D-loop control region. Mitogenome synteny reflects that of other Ostariophysian fishes with the majority of genes and RNAs encoded on the heavy strand (H-strand) except nd6, tRNA-Gln, tRNA-Ala, tRNA-Asn, tRNA-Cys, tRNA-Tyr, tRNA-Ser, tRNA-Glu, and tRNA-Pro. The availability of this R. osculus mitochondrial genome - the first complete mitogenome within the lineage of Rhinichthys riffle daces - provides a foundation for resolving evolutionary relationships among morphologically differentiated populations of R. osculus.

Keywords: Cyprinidae; Cypriniformes; Leuciscinae; mitogenome; mtDNA.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Composition / genetics
  • California
  • Cyprinidae / genetics*
  • Cypriniformes / genetics*
  • DNA, Mitochondrial / genetics
  • Genome, Mitochondrial / genetics*
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • RNA, Transfer / genetics
  • Sequence Analysis, DNA / methods

Substances

  • DNA, Mitochondrial
  • RNA, Ribosomal, 16S
  • RNA, Transfer