Polythiophene derivative on quartz resonators for miRNA capture and assay

Analyst. 2015 Dec 7;140(23):7912-7. doi: 10.1039/c5an01663k. Epub 2015 Oct 19.

Abstract

A novel approach for miRNA assay using a cationic polythiophene derivative, poly[3-(3'-N,N,N-triethylamino-1'-propyloxy)-4-methyl-2,5-thiophene hydrobromide] (PT), immobilized on a quartz resonator is proposed. The cationic PT enables capturing of all RNA sequences in the sample matrix via electrostatic interactions, resulting in the formation of PT-RNA duplex structures on quartz resonators. Biotinylated peptide nucleic acid (b-PNA) sequences are subsequently utilized for the RNA assay, upon monitoring the PT-RNA-b-PNA triplex formation. Signal amplification is achieved by anchoring avidin coated nanoparticles to b-PNA in order to yield responses at clinically relevant concentration regimes. Unlike conventional nucleic acid assay methodologies that usually quantify a specific sequence of RNA, the proposed approach enables the assay of any RNA sequence in the sample matrix upon hybridization with a PNA sequence complementary to the RNA of interest. As an illustration, successful detection of mir21, (a miRNA sequence associated with lung cancer) is demonstrated with a limit of detection of 400 pM. Furthermore, precise quantification of mir21 in plasma samples is demonstrated without requiring PCR and sophisticated instrumentation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biosensing Techniques / methods*
  • Humans
  • MicroRNAs / analysis*
  • MicroRNAs / blood
  • MicroRNAs / isolation & purification*
  • Molecular Structure
  • Polymers / chemistry*
  • Quartz / chemistry*
  • Thiophenes / chemistry*

Substances

  • MicroRNAs
  • Polymers
  • Thiophenes
  • Quartz
  • polythiophene