Functional Importance of Mobile Ribosomal Proteins

Biomed Res Int. 2015:2015:539238. doi: 10.1155/2015/539238. Epub 2015 Sep 20.

Abstract

Although the dynamic motions and peptidyl transferase activity seem to be embedded in the rRNAs, the ribosome contains more than 50 ribosomal proteins (r-proteins), whose functions remain largely elusive. Also, the precise forms of some of these r-proteins, as being part of the ribosome, are not structurally solved due to their high flexibility, which hinders the efforts in their functional elucidation. Owing to recent advances in cryo-electron microscopy, single-molecule techniques, and theoretical modeling, much has been learned about the dynamics of these r-proteins. Surprisingly, allosteric regulations have been found in between spatially separated components as distant as those in the opposite sides of the ribosome. Here, we focus on the functional roles and intricate regulations of the mobile L1 and L12 stalks and L9 and S1 proteins. Conformational flexibility also enables versatile functions for r-proteins beyond translation. The arrangement of r-proteins may be under evolutionary pressure that fine-tunes mass distributions for optimal structural dynamics and catalytic activity of the ribosome.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Allosteric Regulation / physiology
  • Animals
  • Binding Sites
  • Catalysis
  • Computer Simulation
  • Humans
  • Models, Biological
  • Models, Chemical
  • Models, Molecular
  • Protein Binding
  • Protein Conformation
  • RNA, Ribosomal / chemistry*
  • RNA, Ribosomal / physiology
  • RNA, Ribosomal / ultrastructure
  • Ribosomal Proteins / chemistry*
  • Ribosomal Proteins / metabolism
  • Ribosomal Proteins / ultrastructure*
  • Ribosomes / chemistry*
  • Ribosomes / physiology
  • Ribosomes / ultrastructure*
  • Structure-Activity Relationship

Substances

  • RNA, Ribosomal
  • Ribosomal Proteins