2D-DIGE-based proteome expression changes in leaves of rice seedlings exposed to low-level gamma radiation at Iitate village, Fukushima

Plant Signal Behav. 2015;10(12):e1103406. doi: 10.1080/15592324.2015.1103406.

Abstract

The present study continues our previous research on investigating the biological effects of low-level gamma radiation in rice at the heavily contaminated Iitate village in Fukushima, by extending the experiments to unraveling the leaf proteome. 14-days-old plants of Japonica rice (Oryza sativa L. cv. Nipponbare) were subjected to gamma radiation level of upto 4 µSv/h, for 72 h. Following exposure, leaf samples were taken from the around 190 µSv/3 d exposed seedling and total proteins were extracted. The gamma irradiated leaf and control leaf (harvested at the start of the experiment) protein lysates were used in a 2-D differential gel electrophoresis (2D-DIGE) experiment using CyDye labeling in order to asses which spots were differentially represented, a novelty of the study. 2D-DIGE analysis revealed 91 spots with significantly different expression between samples (60 positive, 31 negative). MALDI-TOF and TOF/TOF mass spectrometry analyses revealed those as comprising of 59 different proteins (50 up-accumulated, 9 down-accumulated). The identified proteins were subdivided into 10 categories, according to their biological function, which indicated that the majority of the differentially expressed proteins consisted of the general (non-energy) metabolism and stress response categories. Proteome-wide data point to some effects of low-level gamma radiation exposure on the metabolism of rice leaves.

Keywords: 2D-DIGE; Fukushima; proteomics; radioactively contaminated soil; rice seedling.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Down-Regulation / radiation effects
  • Electrophoresis, Gel, Two-Dimensional / methods*
  • Fluorescent Dyes / metabolism
  • Gamma Rays*
  • Japan
  • Oryza / metabolism*
  • Oryza / radiation effects
  • Plant Leaves / metabolism*
  • Plant Leaves / radiation effects*
  • Plant Proteins / metabolism
  • Proteome / metabolism*
  • Seedlings / metabolism*
  • Seedlings / radiation effects
  • Up-Regulation / radiation effects

Substances

  • Fluorescent Dyes
  • Plant Proteins
  • Proteome