Synthesis and Properties of the 5-Methyluridine Derivative of 3,4-Dihydro-2H-pyran-Bridged Nucleic Acid (DpNA)

J Org Chem. 2015 Nov 6;80(21):10474-81. doi: 10.1021/acs.joc.5b01425. Epub 2015 Oct 14.

Abstract

A novel 2'-O,4'-C-bridged nucleic acid, 3,4-dihydro-2H-pyran bridge moiety (DpNA), with a dioxabicyclo[3.2.1]oct-3-ene ring was designed. Construction of the dihydropyran bridge was achieved by dehydration of a six-membered hemiacetal ring, and the DpNA monomer was synthesized in 10 steps from 5-methyluridine (total yield 9%). The synthesized DpNA monomer was incorporated into oligonucleotides to examine the properties of the modified oligonucleotides. The DpNA-modified oligonucleotides possessed high affinity toward ssRNA and were more resistant to nucleases compared to the corresponding natural oligonucleotide.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bridged-Ring Compounds / chemical synthesis*
  • Bridged-Ring Compounds / chemistry
  • Nucleic Acid Conformation
  • Oligonucleotides / chemical synthesis*
  • Oligonucleotides / chemistry
  • Oligonucleotides, Antisense / chemistry*
  • Pyrans / chemistry*
  • RNA / chemistry*
  • Uridine / analogs & derivatives*
  • Uridine / chemical synthesis
  • Uridine / chemistry

Substances

  • Bridged-Ring Compounds
  • Oligonucleotides
  • Oligonucleotides, Antisense
  • Pyrans
  • ribothymidine
  • RNA
  • Uridine