Structural basis for gene regulation by a B12-dependent photoreceptor

Nature. 2015 Oct 22;526(7574):536-41. doi: 10.1038/nature14950. Epub 2015 Sep 28.

Abstract

Photoreceptor proteins enable organisms to sense and respond to light. The newly discovered CarH-type photoreceptors use a vitamin B12 derivative, adenosylcobalamin, as the light-sensing chromophore to mediate light-dependent gene regulation. Here we present crystal structures of Thermus thermophilus CarH in all three relevant states: in the dark, both free and bound to operator DNA, and after light exposure. These structures provide visualizations of how adenosylcobalamin mediates CarH tetramer formation in the dark, how this tetramer binds to the promoter -35 element to repress transcription, and how light exposure leads to a large-scale conformational change that activates transcription. In addition to the remarkable functional repurposing of adenosylcobalamin from an enzyme cofactor to a light sensor, we find that nature also repurposed two independent protein modules in assembling CarH. These results expand the biological role of vitamin B12 and provide fundamental insight into a new mode of light-dependent gene regulation.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics*
  • Bacterial Proteins / metabolism
  • Base Sequence
  • Cobamides / metabolism*
  • Cobamides / radiation effects
  • Crystallography, X-Ray
  • DNA, Bacterial / genetics
  • DNA, Bacterial / metabolism
  • Darkness
  • Dimerization
  • Gene Expression Regulation, Bacterial* / radiation effects
  • Light
  • Models, Molecular
  • Molecular Sequence Data
  • Operator Regions, Genetic / genetics
  • Promoter Regions, Genetic / genetics
  • Protein Structure, Quaternary / radiation effects
  • Thermus thermophilus* / chemistry
  • Thermus thermophilus* / genetics
  • Thermus thermophilus* / radiation effects
  • Transcription, Genetic / genetics
  • Transcription, Genetic / radiation effects
  • Vitamin B 12 / metabolism*
  • Vitamin B 12 / radiation effects

Substances

  • Bacterial Proteins
  • Cobamides
  • DNA, Bacterial
  • cobamamide
  • Vitamin B 12

Associated data

  • PDB/5C8A
  • PDB/5C8D
  • PDB/5C8E
  • PDB/5C8F