Detection of common dermatophytes in clinical specimens using a simple quantitative real-time TaqMan polymerase chain reaction assay

Br J Dermatol. 2016 Mar;174(3):602-9. doi: 10.1111/bjd.14198. Epub 2015 Nov 18.

Abstract

Background: Dermatophytes are common fungal pathogens causing mostly superficial infections in humans with a high prevalence worldwide. Traditional detection techniques are time-consuming and insensitive, whereas molecular detection methods have proved to be much more rapid and sensitive.

Objectives: To develop a modular singleplex quantitative real-time polymerase chain reaction (qRT-PCR) assay for the detection of the most common dermatophytes in clinical specimens.

Methods: The qRT-PCR assay is based on single-tube reactions with TaqMan probes. We validated the test with 311 clinical samples of human and animal origin submitted for routine diagnosis and compared the qRT-PCR results with microscopy and culture.

Results: qRT-PCR proved to be significantly more sensitive than microscopy and culture, with 21·2% more positive samples. Among the 201 dermatophytes identified 152 were Trichophyton rubrum (75·6%) and 34 were Trichophyton interdigitale (16·9%). Only 15 samples were determined as less common dermatophytes (Microsporum canis, Epidermophyton floccosum, Trichophyton verrucosum and Arthroderma benhamiae). In the present study, pathogen identification was achieved for 95·2% of all samples (including negatives) by applying only three detection tests (pan-dermatophyte, T. rubrum and T. interdigitale).

Conclusions: The qRT-PCR assay developed in this study allows the specific and sensitive detection of relevant dermatophytes at low cost in a short time.

Publication types

  • Evaluation Study

MeSH terms

  • Animals
  • Arthrodermataceae / genetics
  • Arthrodermataceae / isolation & purification*
  • DNA, Fungal / analysis
  • Dermatomycoses / diagnosis*
  • Hair / microbiology
  • Hair Diseases / diagnosis
  • Humans
  • Nail Diseases / diagnosis
  • Nails / microbiology
  • Nucleic Acid Amplification Techniques
  • Real-Time Polymerase Chain Reaction / methods
  • Sensitivity and Specificity
  • Skin / microbiology

Substances

  • DNA, Fungal

Associated data

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