Identification and Characterization of a Novel Gentisate 1,2-Dioxygenase Gene from a Halophilic Martelella Strain

Sci Rep. 2015 Sep 23:5:14307. doi: 10.1038/srep14307.

Abstract

Halophilic Martelella strain AD-3, isolated from highly saline petroleum-contaminated soil, can efficiently degrade polycyclic aromatic hydrocarbons (PAHs), such as phenanthrene and anthracene, in 3-5% salinity. Gentisic acid is a key intermediate in the microbial degradation of PAH compounds. However, there is little information on PAH degradation by moderately halophilic bacteria. In this study, a 1,077-bp long gene encoding gentisate 1,2-dioxygenase (GDO) from a halophilic Martelella strain AD-3 was cloned, sequenced, and expressed in Escherichia coli. The recombinant enzyme GDO was purified and characterized in detail. By using the (18)O isotope experiment and LC-MS analysis, the sources of the two oxygen atoms added onto maleylpyruvate were identified as H2O and O2, respectively. The Km and kcat values for gentisic acid were determined to be 26.64 μM and 161.29 s(-1), respectively. In addition, optimal GDO activity was observed at 30 °C, pH 7.0, and at 12% salinity. Site-directed mutagenesis demonstrated the importance of four highly conserved His residues at positions 155, 157, 167, and 169 for enzyme activity. This finding provides new insights into mechanism and variety of gentisate 1,2-dioxygenase for PAH degradation in high saline conditions.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alphaproteobacteria / enzymology*
  • Alphaproteobacteria / genetics*
  • Amino Acid Sequence
  • Anthracenes / metabolism*
  • Base Sequence
  • Biodegradation, Environmental
  • Cloning, Molecular
  • Dioxygenases / genetics*
  • Escherichia coli / genetics
  • Petroleum Pollution
  • Phenanthrenes / metabolism*
  • Pimelic Acids / chemistry
  • Salinity*
  • Sequence Alignment
  • Sequence Analysis, DNA
  • Sodium Chloride / chemistry
  • Soil / chemistry
  • Soil Microbiology
  • Soil Pollutants

Substances

  • Anthracenes
  • Phenanthrenes
  • Pimelic Acids
  • Soil
  • Soil Pollutants
  • maleylpyruvic acid
  • phenanthrene
  • Sodium Chloride
  • Dioxygenases
  • gentisate 1,2-dioxygenase
  • anthracene